{ "_id": "6a37a7f23efcd9bda44229e4", "Package": "photobiologyFlecks", "Type": "Package", "Title": "Analysis of sun- and shade flecks", "Version": "0.0.0.9000", "Date": "2026-04-22", "Authors@R": "c(\nperson(\"Pedro J.\", \"Aphalo\",\nemail = \"pedro.aphalo@helsinki.fi\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3385-972X\")),\nperson(\"Maxime\", \"Durand\",\nemail = \"maxime.durand@universite-paris-saclay.fr\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-8991-3601\"))\n)", "Description": "Functions for the analysis of time series of natural light\nirradiance measured at high frequency. Denoising, and\nquantification of duration and amplitude of sun-, shade-,\ncloud- and wind flecks.", "License": "GPL (>= 2)", "ByteCompile": "true", "LazyLoad": "true", "LazyData": "true", "Encoding": "UTF-8", "URL": "https://docs.r4photobiology.info/photobiologyFlecks/", "BugReports": "https://github.com/aphalo/photobiologyFlecks/issues/", "RoxygenNote": "7.3.3", "Requires": "R (>= 4.4.0)", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/Needs/website": "rmarkdown", "Repository": "https://aphalo.r-universe.dev", "Date/Publication": "2026-04-22 15:09:50 UTC", "RemoteUrl": "https://github.com/aphalo/photobiologyFlecks", "RemoteRef": "HEAD", "RemoteSha": "27dcddfe67334653ce371b31af135208166377bb", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-21 08:56:40 UTC", "User": "root" }, "Author": "Pedro J. Aphalo [aut, cre] (ORCID:\n),\nMaxime Durand [aut] (ORCID: )", "Maintainer": "Pedro J. Aphalo ", "MD5sum": "08c6ff5e542eec6c8e40f8ab76da5465", "_user": "aphalo", "_type": "src", "_file": "photobiologyFlecks_0.0.0.9000.tar.gz", "_fileid": "ce506e8cf4746b5521e7108bf01e2b76fc82b6632f2cfe4159fdc0a2c68ff7f8", "_filesize": 1407147, "_sha256": "ce506e8cf4746b5521e7108bf01e2b76fc82b6632f2cfe4159fdc0a2c68ff7f8", "_created": "2026-06-21T08:56:40.000Z", "_published": "2026-06-21T08:59:30.060Z", "_distro": "noble", "_jobs": [ { "job": 82556704575, "time": 138, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7773704964" }, { "job": 82556704485, "time": 119, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7773702421" }, { "job": 82556704486, "time": 80, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7773696650" }, { "job": 82556704480, "time": 120, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7773702394" }, { "job": 82556424080, "time": 267, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7773685389" }, { "job": 82556704472, "time": 125, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7773703198" }, { "job": 82556704493, "time": 96, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7773699101" }, { "job": 82556704481, "time": 91, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7773698359" }, { "job": 82556704469, "time": 107, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7773700623" } ], "_buildurl": "https://github.com/r-universe/aphalo/actions/runs/27899226193", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/aphalo/photobiologyFlecks", "_commit": { "id": "27dcddfe67334653ce371b31af135208166377bb", "author": "Pedro Aphalo ", "committer": "Pedro Aphalo ", "message": "Add online-only article to website menue\n", "time": 1776870590 }, "_maintainer": { "name": "Pedro J. Aphalo", "email": "pedro.aphalo@helsinki.fi", "login": "aphalo", "mastodon": "@aphalo@mastodon.social", "linkedin": "in/pedro-j-aphalo-12055234", "orcid": "0000-0003-3385-972X", "description": "Visiting researcher (Retired Senior Lecturer)\n(Sensory Ecology of Plants, Photobiology, Crops, Forest trees, Data Analysis, Data Visualization)", "uuid": 2743159 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "utils", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "dplyr", "version": ">= 1.1.0", "role": "Imports" }, { "package": "anytime", "version": ">= 0.3.10", "role": "Imports" }, { "package": "lubridate", "version": ">= 1.9.4", "role": "Imports" }, { "package": "SunCalcMeeus", "version": ">= 0.1.3", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.5.0", "role": "Suggests" }, { "package": "photobiology", "version": ">= 0.14.0", "role": "Suggests" }, { "package": "photobiologyInOut", "version": ">= 0.4.30", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "aphalo", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-42", "n": 2 }, { "week": "2025-43", "n": 5 }, { "week": "2026-01", "n": 1 }, { "week": "2026-12", "n": 1 }, { "week": "2026-17", "n": 11 } ], "_tags": [], "_stars": 1, "_contributors": [ { "user": "aphalo", "count": 20, "uuid": 2743159 } ], "_userbio": { "uuid": 2743159, "type": "user", "name": "Pedro J. Aphalo", "followers": 70, "description": "Visiting researcher (Retired Senior Lecturer)\r\n(Sensory Ecology of Plants, Photobiology, Crops, Forest trees, Data Analysis, Data Visualization)" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/photobiologyFlecks" }, "_devurl": "https://github.com/aphalo/photobiologyflecks", "_pkgdown": "https://docs.r4photobiology.info/photobiologyFlecks/", "_searchresults": 7, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/photobiologyFlecks.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "combine_integ", "denoise_chunks", "find_flecks", "find_zeros", "split_chunks", "summarize_chunk", "summarize_chunks" ], "_datasets": [ { "name": "three_chunks.tb", "title": "PAR irradiance time series", "object": "three-chunks-tb", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "time", "Q_PAR" ], "rows": 54700, "table": true, "tojson": true } ], "_help": [ { "page": "photobiologyFlecks-package", "title": "photobiologyFlecks: Analysis of sun- and shade flecks", "topics": [ "photobiologyFlecks-package", "photobiologyFlecks" ] }, { "page": "combine_integ", "title": "Combine time series differing in time step", "topics": [ "combine_integ" ] }, { "page": "denoise_chunks", "title": "Denoise differences within data frames", "topics": [ "denoise_chunks" ] }, { "page": "find_flecks", "title": "Find flecks", "topics": [ "find_flecks" ] }, { "page": "find_zeros", "title": "Find all time points when time series crosses zero", "topics": [ "find_zeros" ] }, { "page": "split_chunks", "title": "Split data frame into chunks", "topics": [ "split_chunks" ] }, { "page": "summarize_chunks", "title": "Chunk summaries", "topics": [ "summarize_chunk", "summarize_chunks" ] }, { "page": "three_chunks.tb", "title": "PAR irradiance time series", "topics": [ "three_chunks.tb" ] } ], "_pkglogo": "https://github.com/aphalo/photobiologyFlecks/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/aphalo/photobiologyFlecks/raw/HEAD/README.md", "_rundeps": [ "anytime", "BH", "cli", "cpp11", "dplyr", "generics", "glue", "lifecycle", "lubridate", "magrittr", "pillar", "pkgconfig", "R6", "Rcpp", "rlang", "SunCalcMeeus", "tibble", "tidyselect", "timechange", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "r4p-introduction.Rmd", "filename": "r4p-introduction.html", "title": "User Guide: 0 The R for Photobiology Suite", "author": "Pedro J. Aphalo", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "References", "Packages in the suite", "Acknowledgements" ], "created": "2026-04-21 16:01:06", "modified": "2026-04-21 16:01:06", "commits": 1 }, { "source": "user-guide.Rmd", "filename": "user-guide.html", "title": "User Guide: 1 Pre-processing", "author": "Pedro J. Aphalo", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Current state", "Set up", "The data", "Split data into chunks", "Summaries", "Statistics", "Locating change points", "Using diff()", "Durand's et al. algorithm", "Using a reference", "Using a quantile smoother" ], "created": "2025-10-19 22:19:13", "modified": "2026-04-22 14:43:26", "commits": 12 } ], "_score": 3.6989700043360187, "_indexed": true, "_nocasepkg": "photobiologyflecks", "_universes": [ "aphalo" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.0.0.9000", "date": "2026-06-21T08:59:03.000Z", "distro": "noble", "commit": "27dcddfe67334653ce371b31af135208166377bb", "fileid": "b507ab8857da1ab01d6cb04561e2b0c977b919caaf030842703550873d7ebbce", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aphalo/actions/runs/27899226193" }, { "r": "4.6.0", "os": "linux", "version": "0.0.0.9000", "date": "2026-06-21T08:58:45.000Z", "distro": "noble", "commit": "27dcddfe67334653ce371b31af135208166377bb", "fileid": "773b26627ac3069bccf6dc05d6fa3b1278be98a14c3e266f6fb4a03e2b755a9e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aphalo/actions/runs/27899226193" }, { "r": "4.5.3", "os": "mac", "version": "0.0.0.9000", "date": "2026-06-21T08:58:07.000Z", "commit": "27dcddfe67334653ce371b31af135208166377bb", "fileid": "eadf685d4b2bd1188ee2aa0a2378ea866e291c189203c347d69bcbd938df92d6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aphalo/actions/runs/27899226193" }, { "r": "4.6.0", "os": "mac", "version": "0.0.0.9000", "date": "2026-06-21T08:58:44.000Z", "commit": "27dcddfe67334653ce371b31af135208166377bb", "fileid": "29860a7643c30bf2c16ce29071a06f3e372b8593435ff8015850e0c4798771eb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aphalo/actions/runs/27899226193" }, { "r": "4.6.0", "os": "wasm", "version": "0.0.0.9000", "date": "2026-06-21T08:59:01.000Z", "commit": "27dcddfe67334653ce371b31af135208166377bb", "fileid": "0649cf1a172a20bd7126a330186a1142e6003ce74741650662bac9902e670ca4", "status": "success", "buildurl": "https://github.com/r-universe/aphalo/actions/runs/27899226193" }, { "r": "4.7.0", "os": "win", "version": "0.0.0.9000", "date": "2026-06-21T08:58:14.000Z", "commit": "27dcddfe67334653ce371b31af135208166377bb", "fileid": "02066f9a529d79fca8c58623a39e509fe810b4567553baede42cea51a0148036", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aphalo/actions/runs/27899226193" }, { "r": "4.5.3", "os": "win", "version": "0.0.0.9000", "date": "2026-06-21T08:58:10.000Z", "commit": "27dcddfe67334653ce371b31af135208166377bb", "fileid": "1ffcacfaf32dd7c62afe26ba20d61e067dc25902ce270241b04fcfc7e42005d0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aphalo/actions/runs/27899226193" }, { "r": "4.6.0", "os": "win", "version": "0.0.0.9000", "date": "2026-06-21T08:58:26.000Z", "commit": "27dcddfe67334653ce371b31af135208166377bb", "fileid": "84cfc258647b026566cae69e7ed34409f0f524a52ba11c10b7e9b1926307fc32", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/aphalo/actions/runs/27899226193" } ] }