{
  "_id": "6a101d83acfb0bcc41c8a403",
  "Package": "photobiologyFlecks",
  "Type": "Package",
  "Title": "Analysis of sun- and shade flecks",
  "Version": "0.0.0.9000",
  "Date": "2026-04-22",
  "Authors@R": "c(\nperson(\"Pedro J.\", \"Aphalo\",\nemail = \"pedro.aphalo@helsinki.fi\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3385-972X\")),\nperson(\"Maxime\", \"Durand\",\nemail = \"maxime.durand@universite-paris-saclay.fr\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-8991-3601\"))\n)",
  "Description": "Functions for the analysis of time series of natural light\nirradiance measured at high frequency. Denoising, and\nquantification of duration and amplitude of sun-, shade-,\ncloud- and wind flecks.",
  "License": "GPL (>= 2)",
  "ByteCompile": "true",
  "LazyLoad": "true",
  "LazyData": "true",
  "Encoding": "UTF-8",
  "URL": "https://docs.r4photobiology.info/photobiologyFlecks/",
  "BugReports": "https://github.com/aphalo/photobiologyFlecks/issues/",
  "RoxygenNote": "7.3.3",
  "Requires": "R (>= 4.4.0)",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/Needs/website": "rmarkdown",
  "Repository": "https://aphalo.r-universe.dev",
  "Date/Publication": "2026-04-22 15:09:50 UTC",
  "RemoteUrl": "https://github.com/aphalo/photobiologyFlecks",
  "RemoteRef": "HEAD",
  "RemoteSha": "27dcddfe67334653ce371b31af135208166377bb",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-22 09:05:35 UTC",
    "User": "root"
  },
  "Author": "Pedro J. Aphalo [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3385-972X>),\nMaxime Durand [aut] (ORCID: <https://orcid.org/0000-0002-8991-3601>)",
  "Maintainer": "Pedro J. Aphalo <pedro.aphalo@helsinki.fi>",
  "MD5sum": "c8bc4e579be0a4cbfeb6609c618e50a1",
  "_user": "aphalo",
  "_type": "src",
  "_file": "photobiologyFlecks_0.0.0.9000.tar.gz",
  "_fileid": "58eeeab35c4cabdb3a54177c10a999943f800db68a09a9fdc3f53360132379e0",
  "_filesize": 1404244,
  "_sha256": "58eeeab35c4cabdb3a54177c10a999943f800db68a09a9fdc3f53360132379e0",
  "_created": "2026-05-22T09:05:35.000Z",
  "_published": "2026-05-22T09:10:27.514Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77349637861,
      "time": 141,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7156886631"
    },
    {
      "job": 77349637854,
      "time": 252,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156922083"
    },
    {
      "job": 77349637738,
      "time": 84,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7156867152"
    },
    {
      "job": 77349637775,
      "time": 109,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156875491"
    },
    {
      "job": 77349029544,
      "time": 236,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156837876"
    },
    {
      "job": 77349637975,
      "time": 127,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156881548"
    },
    {
      "job": 77349637726,
      "time": 89,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7156869143"
    },
    {
      "job": 77349637777,
      "time": 164,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7156893847"
    },
    {
      "job": 77349637915,
      "time": 114,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156877746"
    }
  ],
  "_buildurl": "https://github.com/r-universe/aphalo/actions/runs/26278627115",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/aphalo/photobiologyFlecks",
  "_commit": {
    "id": "27dcddfe67334653ce371b31af135208166377bb",
    "author": "Pedro Aphalo <pedro.aphalo@helsinki.fi>",
    "committer": "Pedro Aphalo <pedro.aphalo@helsinki.fi>",
    "message": "Add online-only article to website menue\n",
    "time": 1776870590
  },
  "_maintainer": {
    "name": "Pedro J. Aphalo",
    "email": "pedro.aphalo@helsinki.fi",
    "login": "aphalo",
    "mastodon": "@aphalo@mastodon.social",
    "linkedin": "in/pedro-j-aphalo-12055234",
    "orcid": "0000-0003-3385-972X",
    "description": "Visiting researcher (Retired Senior Lecturer)\n(Sensory Ecology of Plants, Photobiology, Crops, Forest trees, Data Analysis, Data Visualization)",
    "uuid": 2743159
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "version": ">= 1.1.0",
      "role": "Imports"
    },
    {
      "package": "anytime",
      "version": ">= 0.3.10",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "version": ">= 1.9.4",
      "role": "Imports"
    },
    {
      "package": "SunCalcMeeus",
      "version": ">= 0.1.3",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "version": ">= 3.5.0",
      "role": "Suggests"
    },
    {
      "package": "photobiology",
      "version": ">= 0.14.0",
      "role": "Suggests"
    },
    {
      "package": "photobiologyInOut",
      "version": ">= 0.4.30",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "aphalo",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-42",
      "n": 2
    },
    {
      "week": "2025-43",
      "n": 5
    },
    {
      "week": "2026-01",
      "n": 1
    },
    {
      "week": "2026-12",
      "n": 1
    },
    {
      "week": "2026-17",
      "n": 11
    }
  ],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "aphalo",
      "count": 20,
      "uuid": 2743159
    }
  ],
  "_userbio": {
    "uuid": 2743159,
    "type": "user",
    "name": "Pedro J. Aphalo",
    "description": "Visiting researcher (Retired Senior Lecturer)\r\n(Sensory Ecology of Plants, Photobiology, Crops, Forest trees, Data Analysis, Data Visualization)"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/photobiologyFlecks"
  },
  "_devurl": "https://github.com/aphalo/photobiologyflecks",
  "_pkgdown": "https://docs.r4photobiology.info/photobiologyFlecks/",
  "_searchresults": 7,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/photobiologyFlecks.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "combine_integ",
    "denoise_chunks",
    "find_flecks",
    "find_zeros",
    "split_chunks",
    "summarize_chunk",
    "summarize_chunks"
  ],
  "_datasets": [
    {
      "name": "three_chunks.tb",
      "title": "PAR irradiance time series",
      "object": "three-chunks-tb",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "time",
        "Q_PAR"
      ],
      "rows": 54700,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "photobiologyFlecks-package",
      "title": "photobiologyFlecks: Analysis of sun- and shade flecks",
      "topics": [
        "photobiologyFlecks-package",
        "photobiologyFlecks"
      ]
    },
    {
      "page": "combine_integ",
      "title": "Combine time series differing in time step",
      "topics": [
        "combine_integ"
      ]
    },
    {
      "page": "denoise_chunks",
      "title": "Denoise differences within data frames",
      "topics": [
        "denoise_chunks"
      ]
    },
    {
      "page": "find_flecks",
      "title": "Find flecks",
      "topics": [
        "find_flecks"
      ]
    },
    {
      "page": "find_zeros",
      "title": "Find all time points when time series crosses zero",
      "topics": [
        "find_zeros"
      ]
    },
    {
      "page": "split_chunks",
      "title": "Split data frame into chunks",
      "topics": [
        "split_chunks"
      ]
    },
    {
      "page": "summarize_chunks",
      "title": "Chunk summaries",
      "topics": [
        "summarize_chunk",
        "summarize_chunks"
      ]
    },
    {
      "page": "three_chunks.tb",
      "title": "PAR irradiance time series",
      "topics": [
        "three_chunks.tb"
      ]
    }
  ],
  "_pkglogo": "https://github.com/aphalo/photobiologyFlecks/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/aphalo/photobiologyFlecks/raw/HEAD/README.md",
  "_rundeps": [
    "anytime",
    "BH",
    "cli",
    "cpp11",
    "dplyr",
    "generics",
    "glue",
    "lifecycle",
    "lubridate",
    "magrittr",
    "pillar",
    "pkgconfig",
    "R6",
    "Rcpp",
    "rlang",
    "SunCalcMeeus",
    "tibble",
    "tidyselect",
    "timechange",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "r4p-introduction.Rmd",
      "filename": "r4p-introduction.html",
      "title": "User Guide: 0 The R for Photobiology Suite",
      "author": "Pedro J. Aphalo",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "References",
        "Packages in the suite",
        "Acknowledgements"
      ],
      "created": "2026-04-21 16:01:06",
      "modified": "2026-04-21 16:01:06",
      "commits": 1
    },
    {
      "source": "user-guide.Rmd",
      "filename": "user-guide.html",
      "title": "User Guide: 1 Pre-processing",
      "author": "Pedro J. Aphalo",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Current state",
        "Set up",
        "The data",
        "Split data into chunks",
        "Summaries",
        "Statistics",
        "Locating change points",
        "Using diff()",
        "Durand's et al. algorithm",
        "Using a reference",
        "Using a quantile smoother"
      ],
      "created": "2025-10-19 22:19:13",
      "modified": "2026-04-22 14:43:26",
      "commits": 12
    }
  ],
  "_score": 3.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "photobiologyflecks",
  "_universes": [
    "aphalo"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.0.9000",
      "date": "2026-05-22T09:08:01.000Z",
      "distro": "noble",
      "commit": "27dcddfe67334653ce371b31af135208166377bb",
      "fileid": "005de0626921ad2ffb06e8faf7a516b34cb78ef4f7fd82c516a4a39022826a3c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aphalo/actions/runs/26278627115"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.0.9000",
      "date": "2026-05-22T09:09:50.000Z",
      "distro": "noble",
      "commit": "27dcddfe67334653ce371b31af135208166377bb",
      "fileid": "8a029760a07bd0479b7d747d12d94c99448be8e783f8d9c15f2cfc8ac1d3dd5c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aphalo/actions/runs/26278627115"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.0.9000",
      "date": "2026-05-22T09:07:05.000Z",
      "commit": "27dcddfe67334653ce371b31af135208166377bb",
      "fileid": "506c4b7f5d0281fc450f83af1cd2d21cd358b837e17a5197b275e3bab25a1355",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aphalo/actions/runs/26278627115"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.0.9000",
      "date": "2026-05-22T09:07:27.000Z",
      "commit": "27dcddfe67334653ce371b31af135208166377bb",
      "fileid": "d89f73fd000b35edcf4974df92eb7badfe03896e2153548191293ada6a7b02dc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aphalo/actions/runs/26278627115"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.0.9000",
      "date": "2026-05-22T09:07:58.000Z",
      "commit": "27dcddfe67334653ce371b31af135208166377bb",
      "fileid": "8102d8cdd01146c3b3f18802bc8ae76c3127a52be863fc267411322b2e940b4a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/aphalo/actions/runs/26278627115"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-05-22T09:07:06.000Z",
      "commit": "27dcddfe67334653ce371b31af135208166377bb",
      "fileid": "27702c433f39d7990cc56ffe006043ef9e5eaaa01dbb5082294c1b621e6d42b8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aphalo/actions/runs/26278627115"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-05-22T09:08:19.000Z",
      "commit": "27dcddfe67334653ce371b31af135208166377bb",
      "fileid": "4c70bee0e7f0f70e52f13bbd9d7a12290d0d600b79af713886b1223d842a7c31",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aphalo/actions/runs/26278627115"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-05-22T09:07:29.000Z",
      "commit": "27dcddfe67334653ce371b31af135208166377bb",
      "fileid": "a416d29e20e8bdff1a0be77b8b9bdfd8e8f6e149c6dd721a7c35e68cab7f769a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/aphalo/actions/runs/26278627115"
    }
  ]
}