{ "_id": "6ac76bc1de46216d5edcfa47", "Package": "rOmniDriver", "Type": "Package", "Title": "Omni Driver R wrapper", "Version": "0.1.20-2", "Date": "2025-07-26", "Authors@R": "c(\nperson(\"Pedro J.\", \"Aphalo\", email = \"pedro.aphalo@helsinki.fi\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"https://orcid.org/0000-0003-3385-972X\"))\n)", "Maintainer": "Pedro J. Aphalo ", "Description": "This package is a wrapper of the OmniDriver java driver\nfor Ocean Optics spectrometers.", "License": "GPL (>= 2)", "SystemRequirements": "Java JDK (>= 1.8), OmniDriver (>= 2.43)", "VignetteBuilder": "knitr", "LazyLoad": "yes", "Encoding": "UTF-8", "URL": "https://docs.r4photobiology.info/rOmniDriver,\nhttps://github.com/aphalo/romnidriver", "BugReports": "https://github.com/aphalo/romnidriver/issues", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "make default-jdk", "Repository": "https://aphalo.r-universe.dev", "Date/Publication": "2025-07-26 17:22:10 UTC", "RemoteUrl": "https://github.com/aphalo/rOmniDriver", "RemoteRef": "HEAD", "RemoteSha": "cc0d59721972517bd0f3dbe9b6f83e6951afc860", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-08 09:24:51 UTC", "User": "root" }, "Author": "Pedro J. 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Aphalo", "followers": 72, "description": "Visiting researcher (Retired Senior Lecturer)\r\n(Sensory Ecology of Plants, Photobiology, Crops, Forest trees, Data Analysis, Data Visualization)" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rOmniDriver" }, "_devurl": "https://github.com/aphalo/romnidriver", "_pkgdown": "https://docs.r4photobiology.info/rOmniDriver", "_searchresults": 8, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/rOmniDriver.html" ], "_cranurl": false, "_exports": [ "close_all_spectrometers", "get_api_version", "get_bench", "get_board_temperature", "get_boxcar_width", "get_calibration_coefficients_from_buffer", "get_calibration_coefficients_from_eeprom", "get_correct_for_detector_nonlineary", "get_correct_for_electrical_dark", "get_correct_for_stray_light", "get_detector", "get_detector_temperature", "get_feature_controller_board_temperature", "get_feature_controller_internal_trigger", "get_feature_controller_saturation_threshold", "get_feature_detector_temperature", "get_feature_I2C_bus", "get_feature_irradiance_calibration_factor", "get_feature_pixel_binning", "get_feature_spectrum_type", "get_feature_SPI_bus", "get_firmware_model", "get_firmware_version", "get_I2C_bus", "get_integration_time", "get_irradiance_calibration_factors", "get_last_exception", "get_maximum_integration_time", "get_maximum_intensity", "get_micro_time_delta", "get_micro_time_delta_since", "get_milli_time_delta", "get_milli_time_delta_since", "get_minimum_integration_time", "get_name", "get_nano_time_delta", "get_nano_time_delta_since", "get_number_of_channels", "get_number_of_dark_pixels", "get_number_of_enabled_channels", "get_number_of_pixels", "get_scans_to_average", "get_scans_to_avg", "get_seconds_time_delta", "get_seconds_time_delta_since", "get_serial_number", "get_spectrum", "get_trigger_period", "get_trigger_period_valid_range", "get_trigger_source", "get_wavelengths", "get_wrapper_extensions", "highSpdAcq_allocate_buffer", "highSpdAcq_get_number_of_spectra_acquired", "highSpdAcq_get_spectrum", "highSpdAcq_get_time_stamp", "highSpdAcq_start_acquisition", "init_api", "init_extended_api", "init_highres_time_api", "init_srs", "is_api_enabled", "is_channel_enabled", "is_extended_api_enabled", "is_feature_supported_board_temperature", "is_feature_supported_detector_temperature", "is_feature_supported_I2C_bus", "is_feature_supported_internal_trigger", "is_feature_supported_irradiance_calibration_factor", "is_feature_supported_pixel_binning", "is_feature_supported_saturation_threshold", "is_feature_supported_spectrum_type", "is_feature_supported_SPI_bus", "is_highres_time_api_enabled", "is_saturated", "is_spectrum_valid", "is_timeout", "is_USB_timeout", "number_srs", "oo_timestamp_to_string", "open_all_spectrometers", "set_boxcar_width", "set_correct_for_detector_nonlinearity", "set_correct_for_electrical_dark", "set_I2C_bus", "set_integration_time", "set_scans_to_average", "set_scans_to_avg", "set_timeout", "set_trigger_period", "set_trigger_source", "set_USB_timeout", "spectrum_flush", "srs_close", "stop_averaging" ], "_help": [ { "page": "rOmniDriver-package", "title": "rOmniDriver: Omni Driver R wrapper", "topics": [ "rOmniDriver-package", "rOmniDriver" ] }, { "page": "close_all_spectrometers", "title": "close all open connections to spectrometers", "topics": [ "close_all_spectrometers", "srs_close" ] }, { "page": "get_api_version", "title": "Get OmniDriver API version", "topics": [ "get_api_version" ] }, { "page": "get_bench", "title": "Get optical properties of optical bench", "topics": [ "get_bench" ] }, { "page": "get_boxcar_width", "title": "Get current setting of boxcar width", "topics": [ "get_boxcar_width" ] }, { "page": "get_calibration_coefficients_from_buffer", "title": "Get calibration coefficients from buffer", "topics": [ "get_calibration_coefficients_from_buffer" ] }, { "page": "get_calibration_coefficients_from_eeprom", "title": "Get calibration coefficients from EEPROM", "topics": [ "get_calibration_coefficients_from_eeprom" ] }, { "page": "get_correct_for_detector_nonlineary", "title": "Get current setting of linearity correction (enabled or not)", "topics": [ "get_correct_for_detector_nonlineary" ] }, { "page": "get_correct_for_electrical_dark", "title": "Get current setting for electrical dark correction", "topics": [ "get_correct_for_electrical_dark" ] }, { "page": "get_correct_for_stray_light", "title": "Get current setting of stray light correction", "topics": [ "get_correct_for_stray_light" ] }, { "page": "get_detector", "title": "Get description of detector", "topics": [ "get_detector" ] }, { "page": "get_feature_controller_saturation_threshold", "title": "Get feature \"saturation threshold\"", "topics": [ "get_feature_controller_saturation_threshold" ] }, { "page": "get_feature_I2C_bus", "title": "Get feature controller \"I2C Bus\"", "concept": [ "Spectrometer I2C- and SPI-bus functions." ], "topics": [ "get_feature_I2C_bus" ] }, { "page": "get_feature_pixel_binning", "title": "Get feature \"pixel binning\"", "topics": [ "get_feature_pixel_binning" ] }, { "page": "get_feature_spectrum_type", "title": "Get feature \"spectrum type\"", "topics": [ "get_feature_spectrum_type" ] }, { "page": "get_feature_SPI_bus", "title": "Get feature controller \"SPI Bus\"", "concept": [ "Spectrometer I2C- and SPI-bus functions." ], "topics": [ "get_feature_SPI_bus" ] }, { "page": "get_firmware_model", "title": "Get name of spectrometer", "topics": [ "get_firmware_model" ] }, { "page": "get_firmware_version", "title": "Get spectrometer firmware version", "topics": [ "get_firmware_version" ] }, { "page": "get_I2C_bus", "title": "Talk to \"I2C bus\"", "concept": [ "Spectrometer I2C- and SPI-bus functions." ], "topics": [ "get_I2C_bus", "set_I2C_bus" ] }, { "page": "get_integration_time", "title": "Get integration time", "topics": [ "get_integration_time" ] }, { "page": "get_last_exception", "title": "Get OmniDriver last exception", "topics": [ "get_last_exception" ] }, { "page": "get_maximum_integration_time", "title": "Get maximum integration time", "topics": [ "get_maximum_integration_time" ] }, { "page": "get_maximum_intensity", "title": "Get maximum intensity", "topics": [ "get_maximum_intensity" ] }, { "page": "get_minimum_integration_time", "title": "Get minimum integration time", "topics": [ "get_minimum_integration_time" ] }, { "page": "get_name", "title": "Get name of spectrometer", "topics": [ "get_name" ] }, { "page": "get_number_of_channels", "title": "Get number of channels", "topics": [ "get_number_of_channels" ] }, { "page": "get_number_of_dark_pixels", "title": "Get number of dark pixels", "topics": [ "get_number_of_dark_pixels" ] }, { "page": "get_number_of_enabled_channels", "title": "Get number of enabled channels", "topics": [ "get_number_of_enabled_channels" ] }, { "page": "get_number_of_pixels", "title": "Get total number of pixels in CCD array", "topics": [ "get_number_of_pixels" ] }, { "page": "get_scans_to_average", "title": "Get \"number of scans to average\"", "topics": [ "get_scans_to_average", "get_scans_to_avg" ] }, { "page": "get_seconds_time_delta", "title": "Get time difference between time stamps", "concept": [ "high speed acquisition functions" ], "topics": [ "get_micro_time_delta", "get_milli_time_delta", "get_nano_time_delta", "get_seconds_time_delta" ] }, { "page": "get_seconds_time_delta_since", "title": "Get time difference since a time stamp", "concept": [ "high speed acquisition functions" ], "topics": [ "get_micro_time_delta_since", "get_milli_time_delta_since", "get_nano_time_delta_since", "get_seconds_time_delta_since" ] }, { "page": "get_serial_number", "title": "Get serial number of spectrometer", "topics": [ "get_serial_number" ] }, { "page": "get_spectrum", "title": "Get a spectrum from the spectrometer", "topics": [ "get_spectrum" ] }, { "page": "get_SPI_bytes", "title": "Talk to \"SPI bus\"", "concept": [ "Spectrometer I2C- and SPI-bus functions." ], "topics": [ "get_SPI_bytes" ] }, { "page": "get_wavelengths", "title": "Get wavelengths from spectrometer", "topics": [ "get_wavelengths" ] }, { "page": "get_wrapper_extensions", "title": "Get OmniDriver wrapper extensions", "topics": [ "get_wrapper_extensions" ] }, { "page": "highSpdAcq_allocate_buffer", "title": "Allocate memory buffer for high speed acquisition", "concept": [ "high speed acquisition functions" ], "topics": [ "highSpdAcq_allocate_buffer" ] }, { "page": "highSpdAcq_get_number_of_spectra_acquired", "title": "Get the number of spectra acquired at high speed", "concept": [ "high speed acquisition functions" ], "topics": [ "highSpdAcq_get_number_of_spectra_acquired" ] }, { "page": "highSpdAcq_get_spectrum", "title": "Get one spectrum acquired at high speed", "concept": [ "high speed acquisition functions" ], "topics": [ "highSpdAcq_get_spectrum" ] }, { "page": "highSpdAcq_get_time_stamp", "title": "Get the time stamp of one spectrum acquired at high speed", "concept": [ "high speed acquisition functions" ], "topics": [ "highSpdAcq_get_time_stamp" ] }, { "page": "highSpdAcq_start_acquisition", "title": "Start high speed acquisition", "concept": [ "high speed acquisition functions" ], "topics": [ "highSpdAcq_start_acquisition" ] }, { "page": "init_api", "title": "Initialize the connection to the driver", "topics": [ "init_api", "init_extended_api", "init_highres_time_api", "init_srs", "is_api_enabled", "is_extended_api_enabled", "is_highres_time_api_enabled" ] }, { "page": "is_channel_enabled", "title": "Informs whether a channel is enbled or not", "topics": [ "is_channel_enabled" ] }, { "page": "is_feature_supported_board_temperature", "title": "Feature \"Board temperature\"", "topics": [ "get_board_temperature", "get_feature_controller_board_temperature", "is_feature_supported_board_temperature" ] }, { "page": "is_feature_supported_detector_temperature", "title": "Feature \"detector temperature\"", "topics": [ "get_detector_temperature", "get_feature_detector_temperature", "is_feature_supported_detector_temperature" ] }, { "page": "is_feature_supported_I2C_bus", "title": "Is feature \"I2C Bus\" supported?", "concept": [ "Spectrometer I2C- and SPI-bus functions." ], "topics": [ "is_feature_supported_I2C_bus" ] }, { "page": "is_feature_supported_internal_trigger", "title": "Feature \"ìnternal trigger\"", "topics": [ "get_feature_controller_internal_trigger", "get_trigger_period", "get_trigger_period_valid_range", "get_trigger_source", "is_feature_supported_internal_trigger", "set_trigger_period", "set_trigger_source" ] }, { "page": "is_feature_supported_irradiance_calibration_factor", "title": "Feature \"Irradiance Calibration Factor\"", "topics": [ "get_feature_irradiance_calibration_factor", "get_irradiance_calibration_factors", "is_feature_supported_irradiance_calibration_factor" ] }, { "page": "is_feature_supported_pixel_binning", "title": "Is feature \"pixel binning\" supported?", "topics": [ "is_feature_supported_pixel_binning" ] }, { "page": "is_feature_supported_saturation_threshold", "title": "Is feature \"saturation threshold\" supported?", "topics": [ "is_feature_supported_saturation_threshold" ] }, { "page": "is_feature_supported_spectrum_type", "title": "Is feature \"spectrum type\" supported?", "topics": [ "is_feature_supported_spectrum_type" ] }, { "page": "is_feature_supported_SPI_bus", "title": "Is feature \"SPI Bus\" supported?", "concept": [ "Spectrometer I2C- and SPI-bus functions." ], "topics": [ "is_feature_supported_SPI_bus" ] }, { "page": "is_saturated", "title": "Is the most recent spectrum acquired saturated?", "topics": [ "is_saturated" ] }, { "page": "is_spectrum_valid", "title": "Is the most recent spectrum acquired valid?", "topics": [ "is_spectrum_valid" ] }, { "page": "is_timeout", "title": "Did the last operation time out?", "topics": [ "is_timeout" ] }, { "page": "is_USB_timeout", "title": "Did the last USB operation time out?", "topics": [ "is_USB_timeout" ] }, { "page": "oo_timestamp_to_string", "title": "Convert time stamp to string", "concept": [ "high speed acquisition functions" ], "topics": [ "oo_timestamp_to_string" ] }, { "page": "open_all_spectrometers", "title": "Opens connections to all spectrometers", "topics": [ "number_srs", "open_all_spectrometers" ] }, { "page": "set_boxcar_width", "title": "Set \"boxcar width\"", "topics": [ "set_boxcar_width" ] }, { "page": "set_correct_for_detector_nonlinearity", "title": "Set \"correct for detector nonlinearity\"", "topics": [ "set_correct_for_detector_nonlinearity" ] }, { "page": "set_correct_for_electrical_dark", "title": "Set \"correct for electrical dark signal\"", "topics": [ "set_correct_for_electrical_dark" ] }, { "page": "set_integration_time", "title": "Set \"integration time\"", "topics": [ "set_integration_time" ] }, { "page": "set_scans_to_average", "title": "Set \"number of scans to average\"", "topics": [ "set_scans_to_average", "set_scans_to_avg" ] }, { "page": "set_spectrum_type", "title": "Set \"spectrum type\"", "topics": [ "set_spectrum_type" ] }, { "page": "set_timeout", "title": "Set (trigger) \"timeout\"", "topics": [ "set_timeout" ] }, { "page": "set_USB_timeout", "title": "Set USB \"timeout\"", "topics": [ "set_USB_timeout" ] }, { "page": "spectrum_flush", "title": "Flush the most recent spectrum", "topics": [ "spectrum_flush" ] }, { "page": "stop_averaging", "title": "Stop averaging of scans", "topics": [ "stop_averaging" ] } ], "_pkglogo": "https://github.com/aphalo/rOmniDriver/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/aphalo/rOmniDriver/raw/HEAD/README.md", "_rundeps": [ "rJava" ], "_sysdeps": [ { "shlib": 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