Package 'learnrbook'

Title: Datasets and Code Examples from P. J. Aphalo's "Learn R" Book
Description: Data, scripts and code from chunks used as examples in the book "Learn R: As a Language" 1ed and 2ed by Pedro J. Aphalo. ISBN 9780367182533 (pbk 1ed); ISBN 9780367182557 (hbk 1ed); ISBN 9780429060342 (ebk 1ed).
Authors: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <[email protected]>
License: GPL (>= 2)
Version: 2.0.1
Built: 2024-08-25 10:16:05 UTC
Source: https://github.com/aphalo/learnrbook-pkg

Help Index

learnrbook: Datasets and Code Examples from P. J. Aphalo's "Learn R" Book

Description

logo

Data, scripts and code from chunks used as examples in the book "Learn R: As a Language" 1ed and 2ed by Pedro J. Aphalo. ISBN 9780367182533 (pbk 1ed); ISBN 9780367182557 (hbk 1ed); ISBN 9780429060342 (ebk 1ed).

Details

Package 'learnr' is a companion to the books Aphalo, P. (2020). Learn R (1ed). New York: Chapman and Hall/CRC, ISBN 9780367182533" and Aphalo, P. (2023). Learn R (2ed). New York: Chapman and Hall/CRC, ISBN 9781032516998". This package supplies a list of all the packages used in the book. It also contains all the original data sets used in the book as well as code for scripts and code chunks included in the book. Please, consult the "User Guide" under vignettes for instructions.

Author(s)

Maintainer: Pedro J. Aphalo [email protected] (ORCID)

See Also

Useful links:

Subset of RNAseq gene expression data

Description

A data set containing the results from the analysis of data from RNAseq. Subset of 1000 genes.

Usage

clean1000.df

Format

A data.frame with 5 columns and 1000 row names.

Details

The variables are as follows:

  • logFC (numeric)

  • logCPM (numeric)

  • LR (numeric)

  • Pvalue (numeric)

  • outcome (-1, 0, +1)

Note

A subset of size 1000 selected by random sampling,

References

Neha Rai et al. (2020) Plant Cell and Environment, https://doi.org/10.1111/pce.13752.

Subset of RNAseq gene expression data

Description

A data set containing the results from the analysis of data from RNAseq. Subset of 5000 genes.

Usage

clean5000.df

Format

A data.frame with 5 columns and 5000 row names.

Details

The variables are as follows:

  • logFC (numeric)

  • logCPM (numeric)

  • LR (numeric)

  • Pvalue (numeric)

  • outcome (-1, 0, +1)

Note

A subset of size 5000 selected by random sampling,

References

Neha Rai et al. (2020) Plant Cell and Environment, https://doi.org/10.1111/pce.13752.

Packages used in book "Learn R: As a Language" (1ed)

Description

Character vector of package names for the whole book.

Usage

pkgs_all_1ed

Format

A vector of character strings.

Examples

pkgs_all_1ed

Packages used in book "Learn R: As a Language" (2ed)

Description

Character vector of package names for the whole book.

Usage

pkgs_all_2ed

Format

A vector of character strings.

Examples

pkgs_all_2ed

Packages used in ch. 10 of book "Learn R: As a Language" (2ed)

Description

Character vector of package names for chapter 10 "Base R and Extensions: Data Sharing ".

Usage

pkgs_ch10_2ed

Format

A vector of character strings.

Examples

pkgs_ch10_2ed

Packages used in ch. 6 of book "Learn R: As a Language" (1ed)

Description

Character vector of package names for chapter 6 "New grammars of data".

Usage

pkgs_ch6_1ed

Format

A vector of character strings.

Examples

pkgs_ch6_1ed

Packages used in ch. 7 of book "Learn R: As a Language" (1ed)

Description

Character vector of package names for chapter 7 "Grammar of graphics".

Usage

pkgs_ch7_1ed

Format

A vector of character strings.

Examples

pkgs_ch7_1ed

Packages used in ch. 8 of book "Learn R: As a Language" (1ed)

Description

Character vector of package names for chapter 8 "Data import and export".

Usage

pkgs_ch8_1ed

Format

A vector of character strings.

Examples

pkgs_ch8_1ed

Packages used in ch. 8 of book "Learn R: As a Language" (2ed)

Description

Character vector of package names for chapter 8 "R Extensions: Data Wrangling".

Usage

pkgs_ch8_2ed

Format

A vector of character strings.

Examples

pkgs_ch8_2ed

Packages used in ch. 9 of book "Learn R: As a Language" (2ed)

Description

Character vector of package names for chapter 9 "R Extensions: Grammar of Graphics".

Usage

pkgs_ch9_2ed

Format

A vector of character strings.

Examples

pkgs_ch9_2ed

Wind direction and speed data

Description

A data set containing wind speed and direction measured in Viikki, Helsinki, Finland with a Vaisala Weather Transmitter WXT530 (sonic anemometer) during 2016-07-29 at 1 min interval.

Usage

viikki_d29.dat

Format

A tibble with 3 columns and 1440 rows.

Details

The variables are as follows:

  • solar_time (yyyy-mm-dd hh:mm:ss)

  • WindDir_D1_WVT (degrees)

  • WindSpd_S_WVT (m/s)

References

P. J. Aphalo, unpublished data.

Examples

names(viikki_d29.dat)
viikki_d29.dat

Weather data

Description

A data set containing weather data measured in Viikki, Helsinki, Finland. Values for all variables are means of 12 readings at 5 seconds intervals. Sun angles were computed with R package 'photobiology'.

Usage

weather_wk_25_2019.tb

Format

A tibble with 21 columns and 10080 rows.

Details

The variables are as follows:

  • time (yyyy-mm-dd hh:mm:ss)

  • PAR_umol (umol m-2 s-1)

  • PAR_diff_fr (/1)

  • global_watt (W m-2)

  • day_of_year

  • month_of_year

  • month_name

  • calendar_year

  • solar_time (h)

  • sun_elevation (degrees above horizon)

  • sun_azimuth (degrees)

  • was_sunny (T/F)

  • wind_speed (m s-1)

  • wind_direction (degrees)

  • air_temperature_C (C)

  • air_RH (

  • air_DP (C)

  • air_pressure

  • red_umol (umol m-2 s-1)

  • far_red_umol (umol m-2 s-1)

  • red_far_red (ratio)

References

P. J. Aphalo, unpublished data.

Examples

names(weather_wk_25_2019.tb)
weather_wk_25_2019.tb