Package: photobiologyInOut 0.4.30

photobiologyInOut: Read Spectral and Logged Data from Foreign Files

Functions for reading, and in some cases writing, foreign files containing spectral data from spectrometers and their associated software, output from daylight simulation models in common use, and some spectral data repositories. As well as functions for exchange of spectral data with other R packages. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

Authors:Pedro J. Aphalo [aut, cre], Titta K. Kotilainen [ctb], Glenn Davis [ctb]

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photobiologyInOut.pdf |photobiologyInOut.html✨
photobiologyInOut/json (API)
NEWS

# Install 'photobiologyInOut' in R:
install.packages('photobiologyInOut', repos = c('https://aphalo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aphalo/photobiologyinout/issues

Pkgdown site:https://docs.r4photobiology.info

On CRAN:

6.32 score 1 packages 63 scripts 469 downloads 52 exports 49 dependencies

Last updated 18 days agofrom:372bf69d65. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 02 2025
R-4.5-winOKFeb 02 2025
R-4.5-macOKFeb 02 2025
R-4.5-linuxOKFeb 02 2025
R-4.4-winOKFeb 02 2025
R-4.4-macOKFeb 02 2025
R-4.3-winOKFeb 02 2025
R-4.3-macOKFeb 02 2025

Exports:chroma_spct2colorSpeccolorSpec2chroma_spctcolorSpec2mspctcolorSpec2spctfdata2mspctfdata2spcthyperSpec2mspcthyperSpec2spctmspct2colorSpecmspct2fdatamspct2hyperSpecqtuv_cloudsqtuv_m_s.e.irradqtuv_s.e.irradread_ASTER_txtread_avaspec_csvread_avaspec_xlsread_cid_spectravue_csvread_CIE_csvread_csi_datread_fmi_cumread_fmi2mspctread_foreign2mspctread_FReD_csvread_li180_txtread_licor_prnread_m_fmi_cumread_m_li180_txtread_m_licor_prnread_macam_dtaread_oo_jazdataread_oo_jazirradread_oo_jazpcread_oo_pidataread_oo_ssdataread_oo_ssirradread_qtuv_txtread_spectrapen_csvread_tuv_usroutread_tuv_usrout2mspctread_uvspec_disortread_uvspec_disort_vesaread_wasatch_csvread_yoctopuce_csvrspec2mspctrspec2spctspct_CCTspct_CRIspct_SSIspct2colorSpecspct2fdataspct2hyperSpec

Dependencies:anytimeBHbitbit64cellrangerclicliprcolorSpeccpp11crayondplyrfansigenericsgluehmsjsonlitelatticelifecycleloggerlubridatemagrittrphotobiologypillarpkgconfigplyrpolynomprettyunitsprogresspurrrR6Rcppreadrreadxlrematchrlangsplus2RstringistringrSunCalcMeeustibbletidyrtidyselecttimechangetzdbutf8vctrsvroomwithrzoo

User Guide

Pedro J. Aphalo

Rendered fromuser-guide.Rmdusingknitr::rmarkdownon Feb 02 2025.

Last update: 2024-11-22
Started: 2017-08-27

Readme and manuals

Help Manual

Help pageTopics
photobiologyInOut: Read Spectral and Logged Data from Foreign FilesphotobiologyInOut-package photobiologyInOut
Convert 'colorSpec::colorSpec' objectsas.chroma_mspct.colorSpec as.chroma_spct.colorSpec as.filter_mspct.colorSpec as.filter_spct.colorSpec as.generic_mspct.colorSpec as.generic_spct.colorSpec as.reflector_mspct.colorSpec as.reflector_spct.colorSpec as.response_mspct.colorSpec as.response_spct.colorSpec as.source_mspct.colorSpec as.source_spct.colorSpec colorSpec2chroma_spct colorSpec2mspct colorSpec2spct
Convert 'hyperSpec::hyperSpec' objectshyperSpec2mspct hyperSpec2spct mspct2hyperSpec spct2hyperSpec
Convert into 'colorSpec::colorSpec' objectsas.colorSpec as.colorSpec.chroma_spct as.colorSpec.generic_mspct as.colorSpec.generic_spct chroma_spct2colorSpec mspct2colorSpec spct2colorSpec
Convert spectra into 'fda.usc::fdata' objectsfdata2mspct fdata2spct mspct2fdata spct2fdata
Clouds descriptorqtuv_clouds
Spectral irradiance from the Quick TUV calculatorqtuv_m_s.e.irrad qtuv_s.e.irrad
Read File downloaded from ASTER data base.read_ASTER_txt
Read '.csv' File Saved by Avantes' Software for AvaSpec.read_avaspec_csv read_avaspec_xls
Read File Saved by CID's SpectraVue.read_cid_spectravue_csv
Read '.CSV' files from CIEread_CIE_csv
Read '.DAT' file(s) saved by modern Campbell Scientific loggers.read_csi_dat
Read daily cummulated solar spectrum data file(s).read_fmi_cum read_m_fmi_cum
Read multiple solar spectra from a data file.read_fmi2mspct
Read multiple foreign files with spectral dataread_foreign2mspct
Read '.CSV' FReD database.read_FReD_csv
Read '.TXT' File(s) Saved by LI-COR's LI-180 spectroradiometer.read_li180_txt read_m_li180_txt
Read '.PRN' File(s) Saved by LI-COR's PC1800 Program.read_licor_prn read_m_licor_prn
Read '.DTA' File Saved by Macam's Software.read_macam_dta
Read Files Saved by Ocean Optics' Jaz spectrometer.read_oo_jazdata read_oo_jazirrad read_oo_jazpc
Read File Saved by Ocean Optics' Raspberry Pi software.read_oo_pidata
Read File Saved by Ocean Optics' SpectraSuite.read_oo_ssdata read_oo_ssirrad
Read Quick TUV output file.read_qtuv_txt
Read '.CSV' File Saved by PSI's Software.read_spectrapen_csv
Read TUV output file.read_tuv_usrout read_tuv_usrout2mspct
Read libRadtran's uvspec output file.read_uvspec_disort
Read libRadtran's uvspec output file from batch job.read_uvspec_disort_vesa
Read File Saved by Wasatch's Enlighten.read_wasatch_csv
Read '.CSV' file(s) downloaded from YoctoPuce modules.read_yoctopuce_csv
Convert "pavo::rspec" objectsrspec2mspct rspec2spct
Correlated color temperaturespct_CCT
Color reproduction indexspct_CRI
Spectral (color) similarity indexspct_SSI