Package: photobiologyInOut 0.4.33.9000

photobiologyInOut: Read Spectral and Logged Data from Foreign Files

Functions for reading, and in some cases writing, foreign files containing spectral data from spectrometers and their associated software, output from daylight simulation models in common use, and some spectral data repositories. As well as functions for exchange of spectral data with other R packages. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

Authors:Pedro J. Aphalo [aut, cre], Titta K. Kotilainen [ctb], Glenn Davis [ctb]

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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
photobiologyInOut/json (API)

# Install 'photobiologyInOut' in R:

install.packages('photobiologyInOut', repos = c('https://aphalo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aphalo/photobiologyinout/issues

Pkgdown/docs site:https://docs.r4photobiology.info

On CRAN:

6.36 score 1 packages 76 scripts 705 downloads 55 exports 50 dependencies

Last updated from:cb8f8c15eb. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	172
source / vignettes	OK	307
linux-release-x86_64	OK	255
macos-release-arm64	OK	117
macos-oldrel-arm64	OK	108
windows-devel	OK	144
windows-release	OK	145
windows-oldrel	OK	134
wasm-release	OK	168

Exports:chroma_spct2colorSpec colorSpec2chroma_spct colorSpec2mspct colorSpec2spct fdata2mspct fdata2spct hyperSpec2mspct hyperSpec2spct mspct2colorSpec mspct2fdata mspct2hyperSpec qtuv_clouds qtuv_m_s.e.irrad qtuv_s.e.irrad read_asd_txt read_ASTER_txt read_avaspec_csv read_avaspec_xls read_cid_spectravue_csv read_CIE_csv read_csi_dat read_fmi_cum read_fmi2mspct read_foreign2mspct read_FReD_csv read_li180_txt read_licor_prn read_m_fmi_cum read_m_li180_txt read_m_licor_prn read_macam_dta read_oo_jazdata read_oo_jazirrad read_oo_jazpc read_oo_ovirrad read_oo_pidata read_oo_ssdata read_oo_ssirrad read_qtuv_txt read_spectrapen_csv read_tuv_usrout read_tuv_usrout2mspct read_uvspec_disort read_uvspec_disort_vesa read_walz_lsa_xlsx read_wasatch_csv read_yoctopuce_csv rspec2mspct rspec2spct spct_CCT spct_CRI spct_SSI spct2colorSpec spct2fdata spct2hyperSpec

Dependencies:anytime BH bit bit64 bitops caTools cellranger cli clipr colorSpec cpp11 crayon dplyr generics glue hms jsonlite lattice lifecycle logger lubridate magrittr photobiology pillar pkgconfig plyr polynom prettyunits progress purrr R6 Rcpp readr readxl rematch rlang splus2R stringi stringr SunCalcMeeus tibble tidyr tidyselect timechange tzdb utf8 vctrs vroom withr zoo

User Guide

Rendered fromuser-guide.Rmdusingknitr::rmarkdown

Last update: 2026-05-08
Started: 2017-08-27

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
photobiologyInOut: Read Spectral and Logged Data from Foreign Files	photobiologyInOut-package photobiologyInOut
Convert 'colorSpec::colorSpec' objects	as.chroma_mspct.colorSpec as.chroma_spct.colorSpec as.filter_mspct.colorSpec as.filter_spct.colorSpec as.generic_mspct.colorSpec as.generic_spct.colorSpec as.reflector_mspct.colorSpec as.reflector_spct.colorSpec as.response_mspct.colorSpec as.response_spct.colorSpec as.source_mspct.colorSpec as.source_spct.colorSpec colorSpec2chroma_spct colorSpec2mspct colorSpec2spct
Convert 'hyperSpec::hyperSpec' objects	hyperSpec2mspct hyperSpec2spct mspct2hyperSpec spct2hyperSpec
Convert into 'colorSpec::colorSpec' objects	as.colorSpec as.colorSpec.chroma_spct as.colorSpec.generic_mspct as.colorSpec.generic_spct chroma_spct2colorSpec mspct2colorSpec spct2colorSpec
Convert spectra into 'fda.usc::fdata' objects	fdata2mspct fdata2spct mspct2fdata spct2fdata
Clouds descriptor	qtuv_clouds
Spectral irradiance from the Quick TUV calculator	qtuv_m_s.e.irrad qtuv_s.e.irrad
Read File Saved by ASD's conversion tool	read_asd_txt
Read File downloaded from ASTER data base.	read_ASTER_txt
Read '.csv' File Saved by Avantes' Software for AvaSpec.	read_avaspec_csv read_avaspec_xls
Read File Saved by CID's SpectraVue.	read_cid_spectravue_csv
Read '.CSV' files from CIE	read_CIE_csv
Read '.DAT' file(s) saved by modern Campbell Scientific loggers.	read_csi_dat
Read daily cummulated solar spectrum data file(s).	read_fmi_cum read_m_fmi_cum
Read multiple solar spectra from a data file.	read_fmi2mspct
Read multiple foreign files with spectral data	read_foreign2mspct
Read '.CSV' FReD database.	read_FReD_csv
Read '.TXT' File(s) Saved by LI-COR's LI-180 spectroradiometer.	read_li180_txt read_m_li180_txt
Read '.PRN' File(s) Saved by LI-COR's PC1800 Program.	read_licor_prn read_m_licor_prn
Read '.DTA' File Saved by Macam's Software.	read_macam_dta
Read Files Saved by Ocean Optics' Jaz spectrometer.	read_oo_jazdata read_oo_jazirrad read_oo_jazpc
Read File Saved by Ocean Optics' OceanView.	read_oo_ovirrad
Read File Saved by Ocean Optics' Raspberry Pi software.	read_oo_pidata
Read File Saved by Ocean Optics' SpectraSuite.	read_oo_ssdata read_oo_ssirrad
Read Quick TUV output file.	read_qtuv_txt
Read '.CSV' File Saved by PSI's Software.	read_spectrapen_csv
Read TUV output file.	read_tuv_usrout read_tuv_usrout2mspct
Read libRadtran's uvspec output file.	read_uvspec_disort
Read libRadtran's uvspec output file from batch job.	read_uvspec_disort_vesa
Read '.xlsx' file(s) saved by Walz's LSA-2050 leaf analyser	read_walz_lsa_xlsx
Read File Saved by Wasatch's Enlighten.	read_wasatch_csv
Read '.CSV' file(s) downloaded from YoctoPuce modules.	read_yoctopuce_csv
Convert "pavo::rspec" objects	rspec2mspct rspec2spct
Correlated color temperature	spct_CCT
Color reproduction index	spct_CRI
Spectral (color) similarity index	spct_SSI