ggpmisc - Miscellaneous Extensions to 'ggplot2'
Extensions to 'ggplot2' respecting the grammar of graphics paradigm. Statistics to locate and tag peaks and valleys and to label plots with the equation of a fitted polynomial model by ordinary least squares, major axis, quantile and robust and resistant regression approaches. Line and model equation for Normal mixture models. Labels for P-value, R^2 or adjusted R^2 or information criteria for fitted models; parametric and non-parametric correlation; ANOVA table or summary table for fitted models as plot insets; annotations for multiple pairwise comparisons with adjusted P-values. Model fit classes for which suitable methods are provided by package 'broom' and 'broom.mixed' are supported as well as user-defined wrappers on model fit functions, allowing model selection and conditional labelling. Scales and stats to build volcano and quadrant plots based on outcomes, fold changes, p-values and false discovery rates.
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data-analysisdatavizggplot2-annotationsggplot2-statsstatistics
14.06 score 120 stars 18 dependents 5.9k scripts 12k downloads
ggpp - Grammar Extensions to 'ggplot2'
Extensions to 'ggplot2' respecting the grammar of graphics paradigm. Geometries: geom_table(), geom_plot() and geom_grob() add insets to plots using native data coordinates, while geom_table_npc(), geom_plot_npc() and geom_grob_npc() do the same using "npc" coordinates through new aesthetics "npcx" and "npcy". Statistics: select observations based on 2D density. Positions: radial nudging away from a center point and nudging away from a line or curve; combined stacking and nudging; combined dodging and nudging.
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data-labelsdatavizggplot2-enhancementsggplot2-geomsggplot2-insetsggplot2-positions
12.48 score 136 stars 34 dependents 701 scripts 22k downloads
photobiology - Photobiological Calculations
Definitions of classes, methods, operators and functions for use in photobiology and radiation meteorology and climatology. Calculation of effective (weighted) and not-weighted irradiances/doses, fluence rates, transmittance, reflectance, absorptance, absorbance and diverse ratios and other derived quantities from spectral data. Local maxima and minima: peaks, valleys and spikes. Conversion between energy-and photon-based units. Wavelength interpolation. Colours and vision. This package is part of the 'r4photobiology' suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
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lightphotobiologyquantificationr4photobiology-suiteradiationspectrasun-position
9.56 score 6 stars 14 dependents 659 scripts 1.1k downloads
gginnards - Explore the Innards of 'ggplot2' Objects
Extensions to 'ggplot2' providing low-level debug tools: statistics, and geometries echoing their data argument, and functions to inspect theme objects. Layer manipulation: deletion, insertion, extraction and reordering of layers. Deletion of unused variables from the data object embedded in "ggplot" objects.
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datavizdebuggingggplot2-enhancementesggplot2-layer-manipulationinspection
9.28 score 28 stars 3 dependents 414 scripts 4.5k downloads
ggspectra - Extensions to 'ggplot2' for Radiation Spectra
Additional annotations, stats, geoms and scales for plotting "light" spectra with 'ggplot2', together with specializations of ggplot() and autoplot() methods for spectral data and waveband definitions stored in objects of classes defined in package 'photobiology'. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
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datavizggplot2-autoplotggplot2-enhancementesggplot2-geomsggplot2-scalesggplot2-statslightr4photobiology-suiteradiationspectra
8.29 score 6 stars 1 dependents 380 scripts 795 downloads
photobiologyWavebands - Waveband Definitions for UV, VIS, and IR Radiation
Constructors of waveband objects for commonly used biological spectral weighting functions (BSWFs) and for different wavebands describing named ranges of wavelengths in the ultraviolet (UV), visible (VIS) and infrared (IR) regions of the electromagnetic spectrum. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
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7.28 score 1 stars 3 dependents 354 scripts 629 downloads
photobiologyInOut - Read Spectral and Logged Data from Foreign Files
Functions for reading, and in some cases writing, foreign files containing spectral data from spectrometers and their associated software, output from daylight simulation models in common use, and some spectral data repositories. As well as functions for exchange of spectral data with other R packages. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
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6.36 score 1 dependents 76 scripts 705 downloads
SunCalcMeeus - Sun Position and Daylight Calculations
Compute the position of the sun, and local solar time using Meeus' formulae. Compute day and/or night length using different twilight definitions or arbitrary sun elevation angles. This package is part of the 'r4photobiology' suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>. Algorithms from Meeus (1998, ISBN:0943396611).
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6.01 score 1 stars 17 dependents 10 scripts 405 downloads
photobiologyPlants - Plant Photobiology Related Functions and Data
Provides functions for quantifying visible (VIS) and ultraviolet (UV) radiation in relation to the photoreceptors Phytochromes, Cryptochromes, and UVR8 which are present in plants. It also includes data sets on the optical properties of plants. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
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5.85 score 70 scripts 209 downloads
photobiologyFilters - Spectral Transmittance and Spectral Reflectance Data
Spectral 'transmittance' data for frequently used filters and similar materials. Plastic sheets and films; photography filters; theatrical gels; machine-vision filters; various types of window glass; optical glass and some laboratory plastics and glassware. Spectral reflectance data for frequently encountered materials. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
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5.69 score 2 stars 41 scripts 217 downloads
photobiologyLEDs - Spectral Data for Light-Emitting-Diodes
Spectral emission data for some frequently used light emitting diodes available as electronic components. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
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5.40 score 3 stars 42 scripts 198 downloads
ooacquire - Acquire Data from OO Spectrometers
Functions to acquire data directly from Ocean Optics spectrometers, and functions to read similar data from files. Functions to convert raw-counts into counts-per-second and physical quantities. Data are saved in objects of classes defined in package 'photobiology'. The instrument settings, instrument description, date-time of acquisition and optionally goecode are stored as attributes.
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data-acquisitiondata-importr4photobiologyspectracpp
5.25 score 1 stars 110 scripts
photobiologySun - Data for Sunlight Spectra
Data for the extraterrestrial solar spectral irradiance and ground level solar spectral irradiance and irradiance. In addition data for shade light under vegetation and irradiance time series from different broadband sensors. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
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4.76 score 29 scripts 258 downloads
learnrbook - Datasets and Code Examples from P. J. Aphalo's "Learn R" Book
Data, scripts and code from chunks used as examples in the book "Learn R: As a Language" 1ed and 2ed by Pedro J. Aphalo. ISBN 9780367182533 (pbk 1ed); ISBN 9780367182557 (hbk 1ed); ISBN 9780429060342 (ebk 1ed).
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book
4.11 score 1 stars 26 scripts 645 downloads
rOmniDriver - Omni Driver R wrapper
This package is a wrapper of the OmniDriver java driver for Ocean Optics spectrometers.
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data-acquisitionspectroscopyopenjdk
3.00 score 1 stars 8 scripts