ggpmisc - Miscellaneous Extensions to 'ggplot2'
Extensions to 'ggplot2' respecting the grammar of graphics paradigm. Statistics to locate and tag peaks and valleys and to label plots with the equation of a fitted polynomial model by ordinary least squares, major axis, quantile and robust and resistant regression approaches. Line and model equation for Normal mixture models. Labels for P-value, R^2 or adjusted R^2 or information criteria for fitted models; parametric and non-parametric correlation; ANOVA table or summary table for fitted models as plot insets; annotations for multiple pairwise comparisons with adjusted P-values. Model fit classes for which suitable methods are provided by package 'broom' and 'broom.mixed' are supported as well as user-defined wrappers on model fit functions, allowing model selection and conditional labelling. Scales and stats to build volcano and quadrant plots based on outcomes, fold changes, p-values and false discovery rates.
Last updated
data-analysisdatavizggplot2-annotationsggplot2-statsstatistics
14.01 score 120 stars 17 dependents 5.5k scripts 11k downloads
ggpp - Grammar Extensions to 'ggplot2'
Extensions to 'ggplot2' respecting the grammar of graphics paradigm. Geometries: geom_table(), geom_plot() and geom_grob() add insets to plots using native data coordinates, while geom_table_npc(), geom_plot_npc() and geom_grob_npc() do the same using "npc" coordinates through new aesthetics "npcx" and "npcy". Statistics: select observations based on 2D density. Positions: radial nudging away from a center point and nudging away from a line or curve; combined stacking and nudging; combined dodging and nudging.
Last updated
data-labelsdatavizggplot2-enhancementsggplot2-geomsggplot2-insetsggplot2-positions
10.36 score 137 stars 34 dependents 2 scripts 17k downloads
photobiology - Photobiological Calculations
Definitions of classes, methods, operators and functions for use in photobiology and radiation meteorology and climatology. Calculation of effective (weighted) and not-weighted irradiances/doses, fluence rates, transmittance, reflectance, absorptance, absorbance and diverse ratios and other derived quantities from spectral data. Local maxima and minima: peaks, valleys and spikes. Conversion between energy-and photon-based units. Wavelength interpolation. Colours and vision. This package is part of the 'r4photobiology' suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Last updated
lightphotobiologyquantificationr4photobiology-suiteradiationspectrasun-position
9.29 score 6 stars 13 dependents 615 scripts 1.1k downloads
gginnards - Explore the Innards of 'ggplot2' Objects
Extensions to 'ggplot2' providing low-level debug tools: statistics, and geometries echoing their data argument, and functions to inspect theme objects. Layer manipulation: deletion, insertion, extraction and reordering of layers. Deletion of unused variables from the data object embedded in "ggplot" objects.
Last updated
datavizdebuggingggplot2-enhancementesggplot2-layer-manipulationinspection
8.86 score 28 stars 3 dependents 396 scripts 2.4k downloads
ggspectra - Extensions to 'ggplot2' for Radiation Spectra
Additional annotations, stats, geoms and scales for plotting "light" spectra with 'ggplot2', together with specializations of ggplot() and autoplot() methods for spectral data and waveband definitions stored in objects of classes defined in package 'photobiology'. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Last updated
datavizggplot2-autoplotggplot2-enhancementesggplot2-geomsggplot2-scalesggplot2-statslightr4photobiology-suiteradiationspectra
8.05 score 6 stars 1 dependents 375 scripts 828 downloads
photobiologyWavebands - Waveband Definitions for UV, VIS, and IR Radiation
Constructors of waveband objects for commonly used biological spectral weighting functions (BSWFs) and for different wavebands describing named ranges of wavelengths in the ultraviolet (UV), visible (VIS) and infrared (IR) regions of the electromagnetic spectrum. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Last updated
6.81 score 1 stars 3 dependents 360 scripts 440 downloads
photobiologyInOut - Read Spectral and Logged Data from Foreign Files
Functions for reading, and in some cases writing, foreign files containing spectral data from spectrometers and their associated software, output from daylight simulation models in common use, and some spectral data repositories. As well as functions for exchange of spectral data with other R packages. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Last updated
6.14 score 1 dependents 77 scripts 634 downloads
photobiologyFilters - Spectral Transmittance and Spectral Reflectance Data
Spectral 'transmittance' data for frequently used filters and similar materials. Plastic sheets and films; photography filters; theatrical gels; machine-vision filters; various types of window glass; optical glass and some laboratory plastics and glassware. Spectral reflectance data for frequently encountered materials. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Last updated
5.94 score 3 stars 41 scripts 262 downloads
photobiologyPlants - Plant Photobiology Related Functions and Data
Provides functions for quantifying visible (VIS) and ultraviolet (UV) radiation in relation to the photoreceptors Phytochromes, Cryptochromes, and UVR8 which are present in plants. It also includes data sets on the optical properties of plants. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Last updated
5.69 score 70 scripts 351 downloads
SunCalcMeeus - Sun Position and Daylight Calculations
Compute the position of the sun, and local solar time using Meeus' formulae. Compute day and/or night length using different twilight definitions or arbitrary sun elevation angles. This package is part of the 'r4photobiology' suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>. Algorithms from Meeus (1998, ISBN:0943396611).
Last updated
5.68 score 1 stars 16 dependents 10 scripts 550 downloads
ooacquire - Acquire Data from Ocean Optics Spectrometers
Functions to acquire data directly from Ocean Optics spectrometers, and functions to read similar data from files. Functions to convert raw-counts into counts-per-second and physical quantities. Data are saved in objects of classes defined in package 'photobiology'. The instrument settings, instrument description, date-time of acquisition and optionally goecode are stored as attributes.
Last updated
data-acquisitiondata-importr4photobiologyspectracpp
5.25 score 1 stars 98 scripts
photobiologyLEDs - Spectral Data for Light-Emitting-Diodes
Spectral emission data for some frequently used light emitting diodes available as electronic components. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Last updated
5.10 score 3 stars 42 scripts 260 downloads
photobiologySun - Data for Sunlight Spectra
Data for the extraterrestrial solar spectral irradiance and ground level solar spectral irradiance and irradiance. In addition data for shade light under vegetation and irradiance time series from different broadband sensors. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Last updated
4.76 score 29 scripts 288 downloads
learnrbook - Datasets and Code Examples from P. J. Aphalo's "Learn R" Book
Data, scripts and code from chunks used as examples in the book "Learn R: As a Language" 1ed and 2ed by Pedro J. Aphalo. ISBN 9780367182533 (pbk 1ed); ISBN 9780367182557 (hbk 1ed); ISBN 9780429060342 (ebk 1ed).
Last updated
book
4.11 score 1 stars 26 scripts 493 downloads
rOmniDriver - Omni Driver R wrapper
This package is a wrapper of the OmniDriver java driver for Ocean Optics spectrometers.
Last updated
data-acquisitionspectroscopyopenjdk
3.00 score 1 stars 8 scripts