Package: photobiologyPlants 0.5.0

photobiologyPlants: Plant Photobiology Related Functions and Data

Provides functions for quantifying visible (VIS) and ultraviolet (UV) radiation in relation to the photoreceptors Phytochromes, Cryptochromes, and UVR8 which are present in plants. It also includes data sets on the optical properties of plants. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

Authors:Pedro J. Aphalo [aut, cre]

photobiologyPlants_0.5.0.tar.gz
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photobiologyPlants_0.5.0.tgz(r-4.4-any)photobiologyPlants_0.5.0.tgz(r-4.3-any)
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photobiologyPlants.pdf |photobiologyPlants.html✨
photobiologyPlants/json (API)
NEWS

# Install 'photobiologyPlants' in R:
install.packages('photobiologyPlants', repos = c('https://aphalo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/aphalo/photobiologyplants/issues

Datasets:

On CRAN:

18 exports 1.02 score 31 dependencies 177 downloads

Last updated 4 months agofrom:7bd88bf169

Exports:B_GPfr_PtotPfr_Ptot_R_FRPhy_reaction_ratesPhy_SigmaPhy_Sigma_FRPhy_Sigma_RR_FRUV_PARUVA_PARUVA_UVUVA1_UVUVA2_UVUVAlw_UVUVAsw_UVUVB_PARUVB_UVUVB_UVA

Dependencies:clicpp11dplyrfansigenericsgluelatticelifecyclelubridatemagrittrphotobiologyphotobiologyWavebandspillarpkgconfigplyrpolynompurrrR6Rcpprlangsplus2Rstringistringrtibbletidyrtidyselecttimechangeutf8vctrswithrzoo

User Guide

Pedro J. Aphalo

Rendered fromuser-guide.Rmdusingknitr::rmarkdownon Jul 01 2024.

Last update: 2024-04-01
Started: 2018-02-02

User Guide: 0 The R for Photobiology Suite

Pedro J. Aphalo

Rendered fromr4p-introduction.Rmdusingknitr::rmarkdownon Jul 01 2024.

Last update: 2024-04-01
Started: 2023-10-21

Readme and manuals

Help Manual

Help pageTopics
photobiologyPlants: Plant Photobiology Related Functions and DataphotobiologyPlants-package photobiologyPlants
Calculate B:G photon ratio from spectral irradiance.B_G
Spectral data for 'Betula ermanii' leavesBetula_ermanii.mspct
Absorbance spectra for carotenoids.carotenoids.mspct
Fluorescence emission spectra for chlorophylls.chlorophylls_fluorescence.mspct
Absorbance spectra for chlorophylls.chlorophylls.mspct
CRY1, CRY2 and CRY3 absorbance spectra.CRYs.mspct
McCree's action spectra for whole-leaf photosynthesis.McCree_photosynthesis.mspct
Calculate phytochrome photoequilibriumPfr_Ptot Pfr_Ptot.default Pfr_Ptot.numeric Pfr_Ptot.source_spct
Pr:Ptot ratio (photoequilibrium) from R:FR photon ratio.Pfr_Ptot_R_FR
PHOT1 and PHOT2 absorbance spectra.PHOTs.mspct
Phytochrome reaction ratesPhy_reaction_rates
Phytochrome Sigma as a function of wavelengthPhy_Sigma
Pfr Sigma as a function of wavelengthPhy_Sigma_FR
Pr Sigma as a function of wavelengthPhy_Sigma_R
Tabulated data for Phytochrome SigmaPHYs.mspct phytochrome.spct
Calculate R:FR photon ratio from spectral irradiance.R_FR
Spectral optical data for 'Solidago altissima' leavesSolidago_altissima.mspct
Calculate UV:PAR photon ratio from spectral irradiance.UV_PAR
Calculate UVA:PAR photon ratio from spectral irradiance.UVA_PAR
Calculate UVA:UV photon ratio from spectral irradiance.UVA_UV
Calculate UVA1:UV photon ratio from spectral irradiance.UVA1_UV
Calculate UVA2:UV photon ratio from spectral irradiance.UVA2_UV
Calculate UVAlw:UV photon ratio from spectral irradiance.UVAlw_UV
Calculate UVAsw:UV photon ratio from spectral irradiance.UVAsw_UV
Calculate UVB:PAR photon ratio from spectral irradiance.UVB_PAR
Calculate UVB:UV photon ratio from spectral irradiance.UVB_UV
Calculate UVB:UVA photon ratio from spectral irradiance.UVB_UVA
UVR8 absorbance spectrumUVR8s.mspct
ZTL absorbance spectra.ZTLs.mspct