Package: photobiologyWavebands 0.5.2.9000

photobiologyWavebands: Waveband Definitions for UV, VIS, and IR Radiation

Constructors of waveband objects for commonly used biological spectral weighting functions (BSWFs) and for different wavebands describing named ranges of wavelengths in the ultraviolet (UV), visible (VIS) and infrared (IR) regions of the electromagnetic spectrum. Part of the 'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

Authors:Pedro J. Aphalo [aut, cre], Titta K. Kotilainen [ctb]

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photobiologyWavebands.pdf |photobiologyWavebands.html✨
photobiologyWavebands/json (API)
NEWS

# Install 'photobiologyWavebands' in R:
install.packages('photobiologyWavebands', repos = c('https://aphalo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/aphalo/photobiologywavebands/issues

Pkgdown:https://docs.r4photobiology.info

Datasets:

On CRAN:

6.55 score 1 stars 3 packages 394 scripts 344 downloads 76 exports 30 dependencies

Last updated 5 months agofrom:0f24cd32a5. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 30 2024
R-4.5-winOKNov 30 2024
R-4.5-linuxOKNov 30 2024
R-4.4-winOKNov 30 2024
R-4.4-macOKNov 30 2024
R-4.3-winOKNov 30 2024
R-4.3-macOKNov 30 2024

Exports:BlueCH4CH4_e_funCH4_q_funCIECIE_e_funCIE_q_funDNA_GMDNA_GM_q_funDNA_NDNA_N_q_funDNA_PDNA_P_q_funDNA.GMDNA.NDNA.PerythemaETM_bandsFar_redFIRFLAVFLAV_q_funGEN_GGEN_G_q_funGEN_MGEN_M_q_funGEN_TGEN_T_q_funGEN.GGEN.MGEN.TGreenICNIRPICNIRP_e_funIRIR_bandsIRAIRBIRCLandsat_bandsMIRMSS_bandsNDVINIROLI_bandsOrangePARPGPG_q_funphotopic_sensitivityPhRPlant_bandsPurpleRBV_bandsRedscotopic_sensitivitySWIRSWIR1SWIR2TIR1TIR2TIRS_bandsUVUV_bandsUV_health_hazardUVAUVA1UVA2UVAlwUVAswUVBUVCUVIVISVIS_bandsYellow

Dependencies:clicpp11dplyrfansigenericsgluelatticelifecyclelubridatemagrittrphotobiologypillarpkgconfigplyrpolynompurrrR6Rcpprlangsplus2Rstringistringrtibbletidyrtidyselecttimechangeutf8vctrswithrzoo

User Guide

Pedro J. Aphalo

Rendered fromuser-guide.Rmdusingknitr::rmarkdownon Nov 30 2024.

Last update: 2023-01-03
Started: 2017-03-20

User Guide: 0 The R for Photobiology Suite

Pedro J. Aphalo

Rendered fromr4p-introduction.Rmdusingknitr::rmarkdownon Nov 30 2024.

Last update: 2023-10-24
Started: 2021-12-29

Readme and manuals

Help Manual

Help pageTopics
photobiologyWavebands: Waveband Definitions for UV, VIS, and IR RadiationphotobiologyWavebands-package photobiologyWavebands
Constructor of blue wavebandBlue
Constructor of CH4 production from pectin weighted wavebandCH4
Gives values for the CH4 production from pectin BSWF as a function of wavelengthCH4_e_fun
Gives values for the CH4 production from pectin BSWF as a function of wavelengthCH4_q_fun
Gives values for the erythemal BSWF as a function of wavelengthCIE_e_fun
Gives values for the erythemal BSWF as a function of wavelengthCIE_q_fun
CIE1924 luminous efficiency function (photopic human vision)CIE1924_lef.spct
Luminous efficiency function (scotopic human vision)CIE1951_scotopic_lef.spct
CIE2008 luminous efficiency function (2-deg) (photopic human vision)CIE2008_lef2deg.spct
Constructor of DNA damage (SETLOW) weighted wavebandDNA_GM
Gives values for naked DNA BSWF (SETLOW) as a function of wavelengthDNA_GM_q_fun
Constructor of DNA damage (SETLOW) weighted wavebandDNA_N
Gives values for naked DNA BSWF (SETLOW) as a function of wavelengthDNA_N_q_fun
Constructor of DNA damage (Quaite) weighted wavebandDNA_P
Gives values for plant DNA BSWF (Quaite) as a function of wavelengthDNA_P_q_fun
Constructor of erythema-weighted wavebandCIE erythema
Constructor of far-red wavebandFar_red
Constructor of FLAV BSWF flavonoidsFLAV
Gives values for FLAV BSWF (flavonoid) as a function of wavelengthFLAV_q_fun
Constructor of GPAS (Green's formulation) weighted wavebandGEN_G
Gives values for GPAS BSWF (Green's formulation) as a function of wavelengthGEN_G_q_fun
Constructor of GPAS (Micheletti's formulation) weighted wavebandGEN_M
Gives values for GPAS BSWF (Micheletti's formulation) as a function of wavelengthGEN_M_q_fun
Constructor of GPAS (Thimijan's formulation) weighted wavebandGEN_T
Gives values for GPAS BSWF (Timijan's formulation) as a function of wavelengthGEN_T_q_fun
Constructor of green wavebandGreen
ICNIRP UV health hazard BSWF as a function of wavelengthICNIRP_e_fun
Constructors of infra-red wavebandsFIR IR IRA IRB IRC MIR NIR SWIR SWIR1 SWIR2 TIR1 TIR2
Constructor of lists of infrared wavebandsIR_bands
Constructor of lists of wavebands matching Landsat imagersETM_bands Landsat_bands MSS_bands OLI_bands RBV_bands TIRS_bands
Normalized Vegetation IndexNDVI
Constructor of orange wavebandOrange
Constructors of PAR and PhR wavebandsPAR PhR
Constructor of PG weighted wavebandPG
Gives values for the Plant Growth BSWF as a function of wavelengthPG_q_fun
Photopic sensitivity of the human eyephotopic_sensitivity
Constructor of lists of wavebands used in plant biologyPlant_bands
Constructor of purple wavebandPurple
Constructor of red wavebandRed
Scotopic sensitivity of the human eyescotopic_sensitivity
Setlow's action spectrum for DNA damageSetlowTUV.spct
Constructor of ultraviolet wavebandUV
Constructor of lists of UV wavebandsUV_bands
Constructor of UV health hazard weighted wavebandICNIRP UV_health_hazard
Constructor of ultraviolet-A wavebandUVA UVA1 UVA2 UVAlw UVAsw
Constructor of ultraviolet-B wavebandUVB
Constructor of ultraviolet-C wavebandUVC
Calculate UV Index (UVI) from spectral irradianceUVI
Constructor of VIS wavebandVIS
Contructor of lists of VIS wavebandsVIS_bands
Constructor of yellow wavebandYellow